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How a Single Chemical Bond Balances Cells Between Life and Death

With SLAC's X-ray laser and synchrotron, scientists measured exactly how much energy goes into keeping a crucial chemical bond from triggering a cell's death spiral.

New Efficient, Low-Temperature Catalyst for Converting Water and CO to Hydrogen Gas and CO2

Scientists have developed a new low-temperature catalyst for producing high-purity hydrogen gas while simultaneously using up carbon monoxide (CO). The discovery could improve the performance of fuel cells that run on hydrogen fuel but can be poisoned by CO.

Study Sheds Light on How Bacterial Organelles Assemble

Scientists at Berkeley Lab and Michigan State University are providing the clearest view yet of an intact bacterial microcompartment, revealing at atomic-level resolution the structure and assembly of the organelle's protein shell. This work can help provide important information for research in bioenergy, pathogenesis, and biotechnology.

A Single Electron's Tiny Leap Sets Off 'Molecular Sunscreen' Response

In experiments at the Department of Energy's SLAC National Accelerator Laboratory, scientists were able to see the first step of a process that protects a DNA building block called thymine from sun damage: When it's hit with ultraviolet light, a single electron jumps into a slightly higher orbit around the nucleus of a single oxygen atom.

Researchers Find New Mechanism for Genome Regulation

The same mechanisms that separate mixtures of oil and water may also help the organization of an unusual part of our DNA called heterochromatin, according to a new study by Berkeley Lab researchers. They found that liquid-liquid phase separation helps heterochromatin organize large parts of the genome into specific regions of the nucleus. The work addresses a long-standing question about how DNA functions are organized in space and time, including how genes are silenced or expressed.

The Rise of Giant Viruses

Research reveals that giant viruses acquire genes piecemeal from others, with implications for bioenergy production and environmental cleanup.

Grasses: The Secrets Behind Their Success

Researchers find a grass gene affecting how plants manage water and carbon dioxide that could be useful to growing biofuel crops on marginal land.

SLAC Experiment is First to Decipher Atomic Structure of an Intact Virus with an X-ray Laser

An international team of scientists has for the first time used an X-ray free-electron laser to unravel the structure of an intact virus particle on the atomic level. The method dramatically reduces the amount of virus material required, while also allowing the investigations to be carried out several times faster than before. This opens up entirely new research opportunities.

New Perspectives Into Arctic Cloud Phases

Teamwork provides insight into complicated cloud processes that are important to potential environmental changes in the Arctic.

Illuminating a Better Way to Calculate Excitation Energy

In a new study appearing this week in The Journal of Chemical Physics, researchers demonstrate a new method to calculate excitation energies. They used a new approach based on density functional methods, which use an atom-by-atom approach to calculate electronic interactions. By analyzing a benchmark set of small molecules and oligomers, their functional produced more accurate estimates of excitation energy compared to other commonly used density functionals, while requiring less computing power.


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Chicago Quantum Exchange to Create Technologically Transformative Ecosystem

The University of Chicago is collaborating with the U.S. Department of Energy's Argonne National Laboratory and Fermi National Accelerator Laboratory to launch an intellectual hub for advancing academic, industrial and governmental efforts in the science and engineering of quantum information.

Department of Energy Awards Six Research Contracts Totaling $258 Million to Accelerate U.S. Supercomputing Technology

Today U.S. Secretary of Energy Rick Perry announced that six leading U.S. technology companies will receive funding from the Department of Energy's Exascale Computing Project (ECP) as part of its new PathForward program, accelerating the research necessary to deploy the nation's first exascale supercomputers.

Cynthia Jenks Named Director of Argonne's Chemical Sciences and Engineering Division

Argonne has named Cynthia Jenks the next director of the laboratory's Chemical Sciences and Engineering Division. Jenks currently serves as the assistant director for scientific planning and the director of the Chemical and Biological Sciences Division at Ames Laboratory.

Argonne-Developed Technology for Producing Graphene Wins TechConnect National Innovation Award

A method that significantly cuts the time and cost needed to grow graphene has won a 2017 TechConnect National Innovation Award. This is the second year in a row that a team at Argonne's Center for Nanoscale Materials has received this award.

Honeywell UOP and Argonne Seek Research Collaborations in Catalysis Under Technologist in Residence Program

Researchers at Argonne are collaborating with Honeywell UOP scientists to explore innovative energy and chemicals production.

Follow the Fantastic Voyage of the ICARUS Neutrino Detector

The ICARUS neutrino detector, born at Gran Sasso National Lab in Italy and refurbished at CERN, will make its way across the sea to Fermilab this summer. Follow along using an interactive map online.

JSA Awards Graduate Fellowships for Research at Jefferson Lab

Jefferson Sciences Associates announced today the award of eight JSA/Jefferson Lab graduate fellowships. The doctoral students will use the fellowships to support their advanced studies at their universities and conduct research at the Thomas Jefferson National Accelerator Facility (Jefferson Lab) - a U.S. Department of Energy nuclear physics laboratory managed and operated by JSA, a joint venture between SURA and PAE Applied Technologies.

Muon Magnet's Moment Has Arrived

On May 31, the 50-foot-wide superconducting electromagnet at the center of the Muon g-2 experiment saw its first beam of muon particles from Fermilab's accelerators, kicking off a three-year effort to measure just what happens to those particles when placed in a stunningly precise magnetic field. The answer could rewrite scientists' picture of the universe and how it works.

Seven Small Businesses to Collaborate with Argonne to Solve Technical Challenges

Seven small businesses have been selected to collaborate with researchers at Argonne to address technical challenges as part of DOE's Small Business Vouchers Program.

JSA Names Charles Perdrisat and Charles Sinclair as Co-Recipients of its 2017 Outstanding Nuclear Physicist Prize

Jefferson Science Associates, LLC, announced today that Charles Perdrisat and Charles Sinclair are the recipients of the 2017 Outstanding Nuclear Physicist Prize. The 2017 JSA Outstanding Nuclear Physicist Award is jointly awarded to Charles Perdrisat for his pioneering implementation of the polarization transfer technique to determine proton elastic form factors, and to Charles Sinclair for his crucial development of polarized electron beam technology, which made such measurements, and many others, possible.


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Oxygen: The Jekyll and Hyde of Biofuels

Scientists are devising ways to protect plants, biofuels and, ultimately, the atmosphere itself from damage caused by an element that sustains life on earth.

The Rise of Giant Viruses

Research reveals that giant viruses acquire genes piecemeal from others, with implications for bioenergy production and environmental cleanup.

Grasses: The Secrets Behind Their Success

Researchers find a grass gene affecting how plants manage water and carbon dioxide that could be useful to growing biofuel crops on marginal land.

New Perspectives Into Arctic Cloud Phases

Teamwork provides insight into complicated cloud processes that are important to potential environmental changes in the Arctic.

Mountaintop Plants and Soils to Become Out of Sync

Plants and soil microbes may be altered by climate warming at different rates and in different ways, meaning vital nutrient patterns could be misaligned.

If a Tree Falls in the Amazon

For the first time, scientists pinpointed how often storms topple trees, helping to predict how changes in Amazonia affect the world.

Turning Waste into Fuels, Microbial Style

A newly discovered metabolic process linking different bacteria in a community could enhance bioenergy production.

Department of Energy Awards Six Research Contracts Totaling $258 Million to Accelerate U.S. Supercomputing Technology

Today U.S. Secretary of Energy Rick Perry announced that six leading U.S. technology companies will receive funding from the Department of Energy's Exascale Computing Project (ECP) as part of its new PathForward program, accelerating the research necessary to deploy the nation's first exascale supercomputers.

Electrifying Magnetism

Researchers create materials with controllable electrical and magnetic properties, even at room temperature.

One Step Closer to Practical Fast Charging Batteries

Novel electrode materials have designed pathways for electrons and ions during the charge/discharge cycle.


Changing the Game

Article ID: 673349

Released: 2017-04-20 12:05:24

Source Newsroom: Pacific Northwest National Laboratory

  • Credit: Terms of Use: Our images are freely and publicly available for use with the credit line, "Eric Francavilla | Pacific Northwest National Laboratory"; Please use provided caption information for use in appropriate context.

    High performance computing researcher Shuaiwen Leon Song tests a new architecture on rendering graphics for Doom 3, though the research ultimately benefits science that uses visualizations, models and even virtual reality.

RICHLAND, Wash. – When Shuaiwen Leon Song boots up Doom 3 and Half-life 2, he does so in the name of science. Song studies high performance computing at Pacific Northwest National Laboratory, with the goal of making computers smaller, faster and more energy efficient. A more powerful computer, simply put, can solve greater scientific challenges. Like modeling complex chemical reactions or monitoring the electric power grid.

The jump from supercomputers to video games began when Song asked if hardware called 3D stacked memory could do something it was never designed to do: help render 3D graphics. 3D rendering has advanced science with visualizations, models and even virtual reality. It's also the stuff of video games.

"We're pushing the boundaries of what hardware can do," Song said. "And though we tested our idea on video games, this improvement ultimately benefits science."

Song collaborated with researchers from the University of Houston to develop a new architecture for 3D stacked memory that increases 3D rendering speeds up to 65 percent. The researchers exploited the hardware's feature called "processing in memory," the results of which they presented at the 2017 IEEE Symposium on High Performance Computer Architecture, or HPCA.

A normal graphics card uses a graphics processing unit, or GPU, to create images from data stored on memory. 3D stacked memory has an added logic layer that allows for the memory to do some processing too — hence the name "processing in memory." This essentially reduces the data that has to travel from memory to GPU cores. And like an open highway, less traffic means faster speeds.

The researchers found the last step in rendering — called anisotropic filtering — creates the most traffic. So by moving anisotropic filtering to the first step in the pipeline, and performing that process in memory, the researchers found the greatest performance boost.

Song tested the architecture on popular games such as Doom 3 and Half-life 2. Virtual aliens and demons aside, this research is not so different than Song's other work. For example, Song is exploring how high performance computers can model changing networks of information, and how to predict changes in these graphs. With research questions like these, Song means to push the boundaries of what computers can do.

The work was funded by DOE's Office of Science.

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Interdisciplinary teams at Pacific Northwest National Laboratory address many of America's most pressing issues in energy, the environment and national security through advances in basic and applied science. Founded in 1965, PNNL employs 4,400 staff and has an annual budget of nearly $1 billion. It is managed by Battelle for the U.S. Department of Energy's Office of Science. As the single largest supporter of basic research in the physical sciences in the United States, the Office of Science is working to address some of the most pressing challenges of our time. For more information on PNNL, visit the PNNL News Center, or follow PNNL on Facebook, Google+, Instagram, LinkedIn and Twitter.